compare_predictive_information

Contents

• compare_predictive_information
  • Overview
  • Command-line usage
  • Examples

Overview

simulate_library is a program within the sortseq_tools package which creates a library of random mutants from an initial wildtype sequence and mutation rate.

After you install `sortseq_tools`_, this program will be available to run at the command line.

Command-line usage

usage: sortseq compare_predictive_information [-h] [-ds DATASETS] [-s START]
                                              [-e END]
                                              [-expt {None,sortseq,selex,dms,mpra}]
                                              [-m MODELS]
                                              [-t {dna,rna,protein}] [-o OUT]

Options:

-ds, --datasets
	White space delimited file, where the columns are name and file of data sets.
-s=0, --start=0
	Position to start your analyzed region
-e, --end	Position to end your analyzed region
-expt, --exptype
	Undocumented Possible choices: None, sortseq, selex, dms, mpra
-m, --models	File names containing models to evaluate.
-t=dna, --type=dna
	Undocumented Possible choices: dna, rna, protein
-o, --out	Undocumented

Examples