simulate_selection

Contents

• simulate_selection
  • Overview
  • Command-line usage
  • Example Input and Output

Overview

simulate_selection is a program within the sortseq_tools package which simulates a protein selection experiment.

After you install `sortseq_tools`_, this program will be available to run at the command line.

Command-line usage

usage: sortseq simulate_selection [-h] [-tp TIMEPOINTS] [-beta BETA]
                                  [-C TOTALCOUNTS] [-o OUT]

Options:

-tp=2, --timepoints=2
	Number of timepoints
-beta, --beta	Selection Constant
-C=1000000, --totalcounts=1000000
	Number of Sequencing Counts
-o, --out	Undocumented

Example Input and Output

Example Input Table:

seq   ct    val
ACY   10    -.8
YTA   5     -.1
...

Example Output Table:

seq   ct    val    ct_0    ct_1
ACY   10    -.8    7       9
YTA   5     -.1    8       1
...

Example Command to run the analysis:

sortseq simulate_selection -i my_library.txt